Juxtamembrane domain-associated catenin [Source:NCBI gene;Acc:178451]
Chromosome IV: 15,997,835-16,026,847 reverse strand.
WBcel235:BX284604.4
This gene has 8 transcripts (splice variants) and 988 orthologues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| Y105C5B.21e.1 | - | 4061 | 1256aa | Y105C5B.21e.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A078BS85 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| Y105C5B.21a.1 | - | 4055 | 1254aa | Y105C5B.21a.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9U308 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Y105C5B.21f.1 | - | 3552 | 1183aa | Y105C5B.21f.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A078BPN7 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Y105C5B.21c.1 | - | 3546 | 1181aa | Y105C5B.21c.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D3DEL7 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Y105C5B.21h.1 | - | 3350 | 1013aa | Y105C5B.21h.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A078BQQ1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Y105C5B.21d.1 | - | 3334 | 1011aa | Y105C5B.21d.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D3DEL8 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Y105C5B.21g.1 | - | 3261 | 1086aa | Y105C5B.21g.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A078BPM1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Y105C5B.21b.1 | - | 3255 | 1084aa | Y105C5B.21b.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9U308 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
