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Btau_3.1 is a preliminary assembly of the cow, Bos taurus, Hereford
breed. The Btau_3.1 assembly used a combined strategy as developed for
the rat genome (Nature 428:493-521). The combined strategy is a hybrid
of the Whole Genome Shotgun (WGS) approach used for the mouse genome and
the hierarchical (BAC clone) approach used for the human genome. The
sequencing combines BAC shotgun reads with whole-genome-shotgun (WGS)
reads from small insert libraries as well as BAC end sequences. The
project coordination and genome sequencing and assembly is provided by
the Human Genome
Sequencing Center at Baylor College of Medicine
The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 size of the contigs is 48.7 kb and the N50 of the scaffolds is 997.5 kb. The total length of all contigs is 2.73 Gb. When the gaps between contigs in scaffolds are included, the total span of the assembly is 2.87 Gb. The coverage is 7x.
This is a full genebuild on the assembly 3.1 in the standard ensembl way. It also includes sheep BAC ends mapped to the genome
There is no Bos taurus-specific news this release.
Ensembl release 50 will occur in July (rather than in April as originally scheduled).
Read more...
We are now using the new enredo-pecan-ortheus (EPO) pipeline for 7-way alignments (placental mammals).
Read more...
| Assembly: | Btau_3.1, Aug 2006 |
| Genebuild: | Ensembl, Sep 2006 |
| Database version: | 49.3f |
| Known protein-coding genes: | 16,938 |
| Projected protein-coding genes: | 1,781 |
| Novel protein-coding genes: | 3,027 |
| Pseudogenes: | 1,264 |
| RNA genes: | 2,496 |
| Genscan gene predictions: | 59,639 |
| Gene exons: | 217,963 |
| Gene transcripts: | 28,958 |
| SNPs: | 1,841,734 |
| Base Pairs: | 3,247,285,296 |
| Golden Path Length: | 3,033,353,239 |
| Most common InterPro domains: | Top 40 Top 500 |
© 2008 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.
