Transcript: ENSBTAT00000108967.1 HOXC4-201

Description

homeobox C4 [Source:VGNC Symbol;Acc:VGNC:29925]

Location

About this transcript

This transcript has 3 exons, is annotated with 22 domains and features and is associated with 1427 variant alleles.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000004277.6	HOXC4-202	1646	264aa	ENSBTAP00000004277.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4FUC1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000108967.1	HOXC4-201	979	263aa	ENSBTAP00000083323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 979 bps, Translation length: 263 residues

Version

ENSBTAT00000108967.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.