Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PHACTR1 ENSBTAG00000012039

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Description

phosphatase and actin regulator 1 [Source:VGNC Symbol;Acc:VGNC:32804]

Location

Primary_assembly 23: 43,276,073-43,796,814 reverse strand.

ARS-UCD1.3:CM008190.2

About this gene

This gene has 4 transcripts (splice variants), 305 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000081911.2	PHACTR1-201	3543	685aa	ENSBTAP00000059028.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LPU4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000086474.2	PHACTR1-203	3466	581aa	ENSBTAP00000056982.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LFL0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000064101.3	PHACTR1-204	3145	569aa	ENSBTAP00000056347.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N373	-
ENSBTAT00000035406.6	PHACTR1-202	2954	489aa	ENSBTAP00000035281.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N0D8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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