Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ANKRD40CL ENSBTAG00000025183

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Description

ANKRD40 C-terminal like [Source:NCBI gene (formerly Entrezgene);Acc:512899]

Gene Synonyms

LINC00483

Location

Primary_assembly 19: 35,981,207-35,987,326 forward strand.

ARS-UCD1.3:CM008186.2

About this gene

This gene has 4 transcripts (splice variants), 144 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000132136.1	ANKRD40CL-204	1396	154aa	ENSBTAP00000086094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000035290.4	ANKRD40CL-201	1327	145aa	ENSBTAP00000035168.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LZD8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000119761.1	ANKRD40CL-203	1215	148aa	ENSBTAP00000085537.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000088092.1	ANKRD40CL-202	1110	113aa	ENSBTAP00000075131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data