Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Gene: CENPF ENSBTAG00000024449

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Description

centromere protein F [Source:VGNC Symbol;Acc:VGNC:27176]

Location

Primary_assembly 16: 68,929,293-68,992,065 reverse strand.

ARS-UCD1.3:CM008183.2

About this gene

This gene has 3 transcripts (splice variants) and 195 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000106970.1	CENPF-203	11014	3304aa	ENSBTAP00000091476.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000033913.6	CENPF-201	10701	3259aa	ENSBTAP00000033816.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N1F8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000079772.2	CENPF-202	10437	3171aa	ENSBTAP00000071796.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NIE5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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