Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Orthologues
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Gene: HP1BP3 ENSBTAG00000018656

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Description

heterochromatin protein 1 binding protein 3 [Source:VGNC Symbol;Acc:VGNC:29935]

Location

Primary_assembly 2: 131,855,206-131,891,998 forward strand.

ARS-UCD1.3:CM008169.2

About this gene

This gene has 3 transcripts (splice variants) and 208 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000024825.5	HP1BP3-203	3262	555aa	ENSBTAP00000024825.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08DU9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000076273.2	HP1BP3-201	3510	554aa	ENSBTAP00000068482.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08DU9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000096393.1	HP1BP3-202	504	131aa	ENSBTAP00000074910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data