Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLSTN1 ENSBTAG00000011823

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Description

calsyntenin 1 [Source:VGNC Symbol;Acc:VGNC:27466]

Location

Primary_assembly 16: 43,711,929-43,787,672 forward strand.

ARS-UCD1.3:CM008183.2

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000045695.4	CLSTN1-201	4220	980aa	ENSBTAP00000043064.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MD95	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000068308.2	CLSTN1-203	4166	970aa	ENSBTAP00000071907.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NIN4	-
ENSBTAT00000073458.2	CLSTN1-202	4154	961aa	ENSBTAP00000062515.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N0Y8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data