Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPN1 ENSBTAG00000010230

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Description

calpain 1 [Source:VGNC Symbol;Acc:VGNC:26740]

Location

Primary_assembly 29: 43,399,509-43,427,397 forward strand.

ARS-UCD1.3:CM008196.2

About this gene

This gene has 4 transcripts (splice variants), 224 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000130093.1	CAPN1-201	3348	816aa	ENSBTAP00000091522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000097925.1	CAPN1-204	3087	729aa	ENSBTAP00000098417.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000011678.7	CAPN1-203	3075	724aa	ENSBTAP00000011678.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DJ01	-
ENSBTAT00000087345.2	CAPN1-202	2928	717aa	ENSBTAP00000063391.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M124	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data