Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
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Gene: MRPS18B ENSBTAG00000006936

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Description

mitochondrial ribosomal protein S18B [Source:VGNC Symbol;Acc:VGNC:50008]

Location

Primary_assembly 23: 28,366,052-28,373,341 reverse strand.

ARS-UCD1.3:CM008190.2

About this gene

This gene has 3 transcripts (splice variants) and 201 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000009107.5	MRPS18B-203	1444	326aa	ENSBTAP00000009107.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N059	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000072661.2	MRPS18B-201	1272	238aa	ENSBTAP00000072308.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MME6	-
ENSBTAT00000132323.1	MRPS18B-202	1204	246aa	ENSBTAP00000080564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data