Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPATA20 ENSBTAG00000004155

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Description

spermatosis associated 20 [Source:VGNC Symbol;Acc:VGNC:35179]

Location

Primary_assembly 19: 36,171,019-36,179,221 reverse strand.

ARS-UCD1.3:CM008186.2

About this gene

This gene has 4 transcripts (splice variants) and 190 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000070783.2	SPATA20-203	2756	789aa	ENSBTAP00000063643.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0X3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000132589.1	SPATA20-204	3117	781aa	ENSBTAP00000099958.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000005441.6	SPATA20-201	2589	789aa	ENSBTAP00000005441.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4FV36	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000103462.1	SPATA20-202	2484	754aa	ENSBTAP00000079667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data