Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTP4A1 ENSBTAG00000002275

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Description

protein tyrosine phosphatase 4A1 [Source:VGNC Symbol;Acc:VGNC:33523]

Location

Primary_assembly 9: 453,116-458,072 forward strand.

ARS-UCD1.3:CM008176.2

About this gene

This gene has 2 transcripts (splice variants), 219 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000002933.7	PTP4A1-202	1910	173aa	ENSBTAP00000002933.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5E526	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000090457.1	PTP4A1-201	579	148aa	ENSBTAP00000082249.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data