Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLEC5A ENSSSCG00000021933

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Description

C-type lectin domain containing 5A [Source:VGNC Symbol;Acc:VGNC:86757]

Location

Primary_assembly 18: 8,004,448-8,016,308 forward strand.

Sscrofa11.1:CM000829.5

About this gene

This gene has 3 transcripts (splice variants), 218 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000100326.1	CLEC5A-202	672	185aa	ENSSSCP00000077179.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GLF3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000031347.4	CLEC5A-203	2690	165aa	ENSSSCP00000024397.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9GLF3-1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000083863.1	CLEC5A-201	634	156aa	ENSSSCP00000068297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V0H8 A0A5G2R273	-

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Summary

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