Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SDCBP ENSSSCG00000006237

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Description

syndecan binding protein [Source:VGNC Symbol;Acc:VGNC:92657]

Location

Primary_assembly 4: 74,295,922-74,341,085 reverse strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000074218.1	SDCBP-201	2050	300aa	ENSSSCP00000072922.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R6P0 A0A8D0IF93	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000041393.2	SDCBP-203	2136	298aa	ENSSSCP00000032062.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZKH9 A0A4X1SMZ2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000006834.4	SDCBP-202	2096	297aa	ENSSSCP00000006648.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SNY0 F1RT83	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000085523.1	SDCBP-204	1974	244aa	ENSSSCP00000069766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SP12 A0A5G2QXW6	-

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Summary

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