Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
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ID History
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Gene: SUPT5H ENSSSCG00000023556

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Description

SPT5 homolog, DSIF elongation factor subunit [Source:VGNC Symbol;Acc:VGNC:93625]

Location

Primary_assembly 6: 48,095,041-48,125,120 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 5 transcripts (splice variants) and 202 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000075924.2	SUPT5H-204	3644	1085aa	ENSSSCP00000069273.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QYQ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000082102.2	SUPT5H-205	3644	1085aa	ENSSSCP00000074446.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RNJ4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000055113.3	SUPT5H-203	3623	1048aa	ENSSSCP00000057068.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BKE7	-
ENSSSCT00000031855.4	SUPT5H-202	3379	1034aa	ENSSSCP00000020914.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LA48	-
ENSSSCT00000030229.4	SUPT5H-201	3272	998aa	ENSSSCP00000025320.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LMJ9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data