Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
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Pathway
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External references
Supporting evidence
ID History
- Gene history

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Gene: RPA1 ENSSSCG00000017822

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Description

replication protein A1 [Source:VGNC Symbol;Acc:VGNC:92413]

Location

Primary_assembly 12: 48,009,719-48,048,741 forward strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 3 transcripts (splice variants) and 270 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000076926.2	RPA1-202	2679	609aa	ENSSSCP00000063468.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QMX3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000019397.5	RPA1-203	2721	585aa	ENSSSCP00000018882.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1DH38 F1RHH4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000077454.2	RPA1-201	2611	574aa	ENSSSCP00000061423.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QHD4	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data