Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Gene: UPF2 ENSSSCG00000011117

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Description

UPF2 regulator of nonsense mediated mRNA decay [Source:VGNC Symbol;Acc:VGNC:98402]

Location

Primary_assembly 10: 59,898,922-60,090,229 forward strand.

Sscrofa11.1:CM000821.5

About this gene

This gene has 3 transcripts (splice variants) and 216 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000029333.4	UPF2-203	5340	1270aa	ENSSSCP00000027852.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LUQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000094919.1	UPF2-202	9704	1268aa	ENSSSCP00000079441.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FJP4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000096648.1	UPF2-201	4664	1220aa	ENSSSCP00000078048.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FIA9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data