Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLIT2 ENSSSCG00000008749

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Description

slit guidance ligand 2 [Source:VGNC Symbol;Acc:VGNC:93204]

Location

Primary_assembly 8: 14,758,335-15,149,510 forward strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 3 transcripts (splice variants), 194 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000009572.5	SLIT2-201	4987	1542aa	ENSSSCP00000009325.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1S5C4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000086395.2	SLIT2-203	6313	1525aa	ENSSSCP00000072006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R4J3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000054198.3	SLIT2-202	4948	1529aa	ENSSSCP00000051600.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B5N1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data