Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
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  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
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Pathway
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External references
Supporting evidence
ID History
- Gene history

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Gene: LEO1 ENSSSCG00000004625

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Description

LEO1 homolog, Paf1/RNA polymerase II complex component [Source:VGNC Symbol;Acc:VGNC:89683]

Location

Primary_assembly 1: 119,805,006-119,859,434 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 4 transcripts (splice variants) and 203 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000005108.5	LEO1-202	2190	666aa	ENSSSCP00000004984.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1T486 F1RZB7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000058640.3	LEO1-204	2995	642aa	ENSSSCP00000045109.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AMH2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000090793.2	LEO1-203	2010	606aa	ENSSSCP00000069337.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1T3I8 A0A5G2REL8	-
ENSSSCT00000081900.2	LEO1-201	2006	618aa	ENSSSCP00000061872.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QE01	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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