Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RPS15 ENSSSCG00000033169

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Description

ribosomal protein S15 [Source:NCBI gene (formerly Entrezgene);Acc:397607]

Gene Synonyms

RIG

Location

Primary_assembly 2: 77,043,329-77,046,747 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 4 transcripts (splice variants), 116 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000094259.1	RPS15-203	498	152aa	ENSSSCP00000077697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VTH3 A0A8W4FEK9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000048907.3	RPS15-202	2468	145aa	ENSSSCP00000045242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AMU5 A0A8D1JCC2	-
ENSSSCT00000102918.1	RPS15-204	537	145aa	ENSSSCP00000075558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P62844	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000043875.3	RPS15-201	471	143aa	ENSSSCP00000036820.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VP46 A0A5S6HA49	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data