Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Gene: GRN ENSSSCG00000017355

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Description

granulin precursor [Source:NCBI gene (formerly Entrezgene);Acc:733645]

Location

Primary_assembly 12: 18,893,770-18,900,446 reverse strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 6 transcripts (splice variants) and 197 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000077476.1	GRN-205	4895	656aa	ENSSSCP00000071039.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R1P5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000037733.3	GRN-202	4772	615aa	ENSSSCP00000055210.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BGE8	-
ENSSSCT00000063358.2	GRN-203	4649	574aa	ENSSSCP00000034514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZS87	-
ENSSSCT00000070063.1	GRN-204	4625	566aa	ENSSSCP00000068158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QTJ6 A0A8D1N377	-
ENSSSCT00000018893.4	GRN-201	2338	583aa	ENSSSCP00000018389.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1RLK1 F1RQZ0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000087427.1	GRN-206	1885	432aa	ENSSSCP00000067420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R9Y4 A0A8D1N3E9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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