Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VIM ENSSSCG00000011033

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Description

vimentin [Source:VGNC Symbol;Acc:VGNC:95565]

Location

Primary_assembly 10: 43,517,307-43,526,170 forward strand.

Sscrofa11.1:CM000821.5

About this gene

This gene has 3 transcripts (splice variants), 223 orthologues and 73 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000065218.2	VIM-201	1743	469aa	ENSSSCP00000031624.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S6H025 A0A8D1LUG2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000071311.2	VIM-202	2600	435aa	ENSSSCP00000060330.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QE62 A0A8D1IJK2	-
ENSSSCT00000012075.4	VIM-203	2046	466aa	ENSSSCP00000011767.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P02543	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data