Transcript: ENSRNOT00000001404.6 Usp42-201

Description

ubiquitin specific peptidase 42 [Source:RGD Symbol;Acc:1305231]

Gene Synonyms

LOC288482

Location

About this transcript

This transcript has 16 exons, is annotated with 32 domains and features, is associated with 62 variant alleles and maps to 200 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000001404.6	Usp42-201	4176	1339aa	ENSRNOP00000001404.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2UH81	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000095083.1	Usp42-202	7302	1325aa	ENSRNOP00000093270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZU96	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 4,176 bps, Translation length: 1,339 residues

Version

ENSRNOT00000001404.6

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.