Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Itsn2 ENSRNOG00000046741

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Description

intersectin 2 [Source:RGD Symbol;Acc:1590890]

Gene Synonyms

LOC313934

Location

Primary_assembly 6: 27,600,406-27,727,124 forward strand.

mRatBN7.2:CM026979.1

About this gene

This gene has 4 transcripts (splice variants), 284 orthologues, 10 paralogues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000099866.1	Itsn2-202	6937	1716aa	ENSRNOP00000089614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A8K6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000100901.1	Itsn2-203	6838	1683aa	ENSRNOP00000094789.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASA9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000119587.1	Itsn2-204	6757	1656aa	ENSRNOP00000096723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMD2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000074150.4	Itsn2-201	5643	1715aa	ENSRNOP00000065329.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R7A6	-

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Summary

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