Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Tpd52l2 ENSRNOG00000015067

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Description

TPD52 like 2 [Source:RGD Symbol;Acc:735167]

Gene Synonyms

MGC73020

Location

Primary_assembly 3: 168,594,609-168,619,762 forward strand.

mRatBN7.2:CM026976.1

About this gene

This gene has 4 transcripts (splice variants), 162 orthologues, 7 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000020210.6	Tpd52l2-201	7811	474aa	ENSRNOP00000020210.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XIL6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000114740.1	Tpd52l2-204	7635	474aa	ENSRNOP00000080130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XIL6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000100247.1	Tpd52l2-202	7590	474aa	ENSRNOP00000082032.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XIL6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000114404.1	Tpd52l2-203	7572	474aa	ENSRNOP00000084244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XIL6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data