Gene: Sparc ENSRNOG00000012840

Description

secreted protein acidic and cysteine rich [Source:RGD Symbol;Acc:3742]

Gene Synonyms

BM-40, ON

Location

Primary_assembly 10: 39,516,406-39,538,396 reverse strand.

mRatBN7.2:CM026983.1

About this gene

This gene has 4 transcripts (splice variants), 203 orthologues, 1 paralogue and is associated with 45 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000098312.1	Sparc-202	1991	329aa	ENSRNOP00000094410.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ALJ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000099801.1	Sparc-203	2181	327aa	ENSRNOP00000083269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZWN9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000017486.8	Sparc-201	2036	278aa	ENSRNOP00000017486.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q9I7	-
ENSRNOT00000115607.1	Sparc-204	1413	311aa	ENSRNOP00000093140.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GK51	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,