Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cntn1 ENSRNOG00000004438

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Description

contactin 1 [Source:RGD Symbol;Acc:621300]

Gene Synonyms

F3

Location

Primary_assembly 7: 123,372,792-123,558,541 forward strand.

mRatBN7.2:CM026980.1

About this gene

This gene has 2 transcripts (splice variants), 278 orthologues, 35 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000080621.2	Cntn1-202	3072	1023aa	ENSRNOP00000071355.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2R3Y6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000006219.5	Cntn1-201	3210	1021aa	ENSRNOP00000006219.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q63198	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data