Gene: Jmjd1c ENSRNOG00000000648

Description

jumonji domain containing 1C [Source:RGD Symbol;Acc:708458]

Gene Synonyms

LOC171120, LOC309738, Pr2

Location

Primary_assembly 20: 21,332,147-21,463,122 reverse strand.

mRatBN7.2:CM026993.1

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues, 3 paralogues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000099911.1	Jmjd1c-202	8601	2526aa	ENSRNOP00000079482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZN85	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000109730.1	Jmjd1c-203	10425	2372aa	ENSRNOP00000094959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ANV7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000000804.7	Jmjd1c-201	8222	2297aa	ENSRNOP00000000804.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LMK8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,