Transcript: ENSMUST00000161568.8 Tmem167-203

Description

transmembrane protein 167 [Source:MGI Symbol;Acc:MGI:1913324]

Gene Synonyms

0610041E09Rik, 5730424F14Rik, Gm10085

Location

Chromosome 13: 90,237,242-90,260,376 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 1509 variant alleles and maps to 596 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000012422.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000161568.8	Tmem167-203	8689	72aa	ENSMUSP00000125314.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36741	Q9CR64	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000012566.9	Tmem167-201	1541	60aa	ENSMUSP00000012566.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9CR64-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000161457.8	Tmem167-202	1226	56aa	ENSMUSP00000124571.2	Nonsense mediated decay		E0CY07	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 8,689 bps, Translation length: 72 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CR64

CCDS

This transcript is a member of the Mouse CCDS set: CCDS36741

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000161568.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000161568.8 Tmem167-203

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Transcript: ENSMUST00000161568.8 Tmem167-203

Summary

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