Transcript: ENSMUST00000234882.2 Vmn2r112-204

Description

vomeronasal 2, receptor 112 [Source:MGI Symbol;Acc:MGI:3644292]

Gene Synonyms

EG628185

Location

Chromosome 17: 22,819,932-22,839,823 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 41 domains and features, is associated with 2182 variant alleles and maps to 124 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000094921.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000097381.5	Vmn2r112-201	4480	857aa	ENSMUSP00000094994.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50003	L7N221	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234882.2	Vmn2r112-204	4432	841aa	ENSMUSP00000157078.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EG89	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000234826.2	Vmn2r112-203	4322	465aa	ENSMUSP00000157166.2	Nonsense mediated decay		A0A3Q4EHY5	-
ENSMUST00000234464.2	Vmn2r112-202	9615	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 4,432 bps, Translation length: 841 residues

Version

ENSMUST00000234882.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000234882.2 Vmn2r112-204

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Transcript: ENSMUST00000234882.2 Vmn2r112-204

Summary

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