Transcript: ENSMUST00000192409.2 Pcdhb22-202

Description

protocadherin beta 22 [Source:MGI Symbol;Acc:MGI:2136760]

Gene Synonyms

Pcdhb15, PcdhbV

Location

Chromosome 18: 37,650,924-37,657,532 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 50 domains and features, is associated with 973 variant alleles and maps to 201 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000073591.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000192409.2	Pcdhb22-202	6609	794aa	ENSMUSP00000141521.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29187	Q91XZ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000097609.3	Pcdhb22-201	2266	537aa	ENSMUSP00000095214.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q52KQ3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 6,609 bps, Translation length: 794 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29187

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000192409.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000192409.2 Pcdhb22-202

Summary

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Transcript: ENSMUST00000192409.2 Pcdhb22-202

Summary

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