Transcript: ENSMUST00000236094.2 Sorcs3-203

Description

sortilin-related VPS10 domain containing receptor 3 [Source:MGI Symbol;Acc:MGI:1913923]

Gene Synonyms

6330404A12Rik

Location

Chromosome 19: 48,418,399-48,643,749 forward strand.

About this transcript

This transcript has 7 exons, is associated with 12104 variant alleles and maps to 54 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000063434.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000078880.6	Sorcs3-201	5634	1219aa	ENSMUSP00000077919.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38020	Q1HL22 Q8VI51	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235967.2	Sorcs3-202	2788	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000236094.2	Sorcs3-203	2011	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 2,011 bps,

Version

ENSMUST00000236094.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

Transcript: ENSMUST00000236094.2 Sorcs3-203

Summary

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Transcript: ENSMUST00000236094.2 Sorcs3-203

Summary

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