Transcript: ENSMUST00000061717.4 Pcdhb6-201

Description

protocadherin beta 6 [Source:MGI Symbol;Acc:MGI:2136740]

Gene Synonyms

Pcdhb5B, PcdhbF

Location

Chromosome 18: 37,466,999-37,470,727 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 53 domains and features, is associated with 921 variant alleles and maps to 114 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000051678.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000061717.4	Pcdhb6-201	3729	772aa	ENSMUSP00000058592.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29174	Q91XZ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000194655.2	Pcdhb6-202	681	60aa	ENSMUSP00000141773.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A6YX01	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 3,729 bps, Translation length: 772 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q91XZ4

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29174

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000061717.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000061717.4 Pcdhb6-201

Summary

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Transcript: ENSMUST00000061717.4 Pcdhb6-201

Summary

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