Transcript: ENSMUST00000234927.2 Cyp1b1-203

Description

cytochrome P450, family 1, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88590]

Location

Chromosome 17: 80,008,966-80,021,084 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 1229 variant alleles and maps to 83 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024087.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024894.2	Cyp1b1-201	5128	543aa	ENSMUSP00000024894.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28986	Q64429	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234361.2	Cyp1b1-202	3398	487aa	ENSMUSP00000157049.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UTK2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000234927.2	Cyp1b1-203	1436	289aa	ENSMUSP00000157101.2	Nonsense mediated decay		A0A3Q4L2V1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,436 bps, Translation length: 289 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000234927.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000234927.2 Cyp1b1-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000234927.2 Cyp1b1-203

Summary

About Us

Get help

Our sister sites

Follow us