Gene: Hmga1 ENSMUSG00000046711

Description

high mobility group AT-hook 1 [Source:MGI Symbol;Acc:MGI:96160]

Gene Synonyms

HMG-I(Y), HMGI(Y), HMGY, Hmga1a, Hmga1b, Hmgi, Hmgiy

Location

Chromosome 17: 27,775,471-27,782,648 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 17 transcripts (splice variants), 92 orthologues, 1 paralogue and is associated with 30 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000231866.2	Hmga1-212	584	118aa	ENSMUSP00000155966.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6F6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000231874.2	Hmga1-213	2001	107aa	ENSMUSP00000156199.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28564	P17095-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000118570.2	Hmga1-204	1898	96aa	ENSMUSP00000114101.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50044	P17095-1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231825.2	Hmga1-211	1717	96aa	ENSMUSP00000156327.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50044	P17095-1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSMUST00000232265.2	Hmga1-216	1681	107aa	ENSMUSP00000156173.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28564	P17095-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000114888.11	Hmga1-201	1631	96aa	ENSMUSP00000110538.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50044	P17095-1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000117600.9	Hmga1-203	1595	106aa	ENSMUSP00000113068.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3TE85	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000118599.9	Hmga1-205	1045	107aa	ENSMUSP00000113015.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28564	P17095-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000119486.9	Hmga1-206	1030	107aa	ENSMUSP00000113916.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28564	P17095-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000232552.2	Hmga1-217	917	96aa	ENSMUSP00000156044.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50044	P17095-1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSMUST00000117254.9	Hmga1-202	916	95aa	ENSMUSP00000113011.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A384DV79	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000232013.2	Hmga1-214	805	107aa	ENSMUSP00000155886.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28564	P17095-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000231358.2	Hmga1-208	805	96aa	ENSMUSP00000155876.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50044	P17095-1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSMUST00000231796.2	Hmga1-210	706	111aa	ENSMUSP00000155922.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6E8	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000231780.2	Hmga1-209	619	87aa	ENSMUSP00000155964.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6G6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000232253.2	Hmga1-215	600	106aa	ENSMUSP00000155874.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3TE85	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000231243.2	Hmga1-207	524	118aa	ENSMUSP00000155919.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6D0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,