Gene: D16Ertd472e ENSMUSG00000022864

Description

DNA segment, Chr 16, ERATO Doi 472, expressed [Source:MGI Symbol;Acc:MGI:1196400]

Gene Synonyms

1700010I10Rik, 2310009O17Rik, E330003K22Rik

Location

Chromosome 16: 78,337,226-78,373,596 reverse strand.

GRCm39:CM001009.3

About this gene

This gene has 8 transcripts (splice variants), 201 orthologues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000232052.2	D16Ertd472e-206	6127	290aa	ENSMUSP00000156198.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28278	Q9D7G4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000231973.2	D16Ertd472e-205	5687	290aa	ENSMUSP00000156370.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28278	Q9D7G4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000114220.9	D16Ertd472e-203	2644	290aa	ENSMUSP00000109858.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28278	Q9D7G4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000114219.8	D16Ertd472e-202	1576	290aa	ENSMUSP00000109857.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28278	Q9D7G4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000114218.2	D16Ertd472e-201	1271	290aa	ENSMUSP00000109856.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28278	Q9D7G4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000232528.2	D16Ertd472e-208	1007	214aa	ENSMUSP00000156192.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6Y7	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000231272.2	D16Ertd472e-204	746	171aa	ENSMUSP00000156262.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P742	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000232329.2	D16Ertd472e-207	557	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-