Transcript: ENST00000673075.2 SAMD1-204

Description

sterile alpha motif domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17958]

Location

About this transcript

This transcript has 5 exons, is annotated with 48 domains and features, is associated with 3565 variant alleles and maps to 372 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000673075.2	SAMD1-204	2514	538aa	ENSP00000500116.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6SPF0	NM_138352.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000710476.1	SAMD1-205	750	129aa	ENSP00000518303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000710477.1	SAMD1-206	143	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,514 bps, Translation length: 538 residues

MANE

This MANE Select transcript contains ENSP00000500116 and matches to NM_138352.3 and NP_612361.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6SPF0

Version

ENST00000673075.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.