Transcript: ENST00000630040.1 TRAPPC4-223

Description

trafficking protein particle complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:19943]

Gene Synonyms

PTD009, SBDN, TRS23

Location

Scaffold HG2217_PATCH: 40,395-45,259 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature and maps to 248 oligo probes.

Gene

This transcript is a product of gene ENSG00000280495.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000625680.2	TRAPPC4-216	1209	257aa	ENSP00000485730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PN70	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000629243.3	TRAPPC4-221	1425	219aa	ENSP00000487467.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9Y296-1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000625526.2	TRAPPC4-215	849	181aa	ENSP00000485724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KP27	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000629713.2	TRAPPC4-222	794	165aa	ENSP00000486496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9Y296-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000630169.2	TRAPPC4-224	654	126aa	ENSP00000486097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PKS9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000627703.2	TRAPPC4-219	583	176aa	ENSP00000486853.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PQE8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000630040.1	TRAPPC4-223	817	126aa	ENSP00000487585.1	Nonsense mediated decay	G5EA23	-	-
ENST00000626820.2	TRAPPC4-217	768	117aa	ENSP00000486303.1	Nonsense mediated decay	G3V1A0	-	-
ENST00000630544.1	TRAPPC4-227	392	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000630535.1	TRAPPC4-226	1924	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000626997.1	TRAPPC4-218	1340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000628720.2	TRAPPC4-220	1135	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000631071.1	TRAPPC4-228	980	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000630172.1	TRAPPC4-225	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 817 bps, Translation length: 126 residues

Version

ENST00000630040.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000630040.1 TRAPPC4-223

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Transcript: ENST00000630040.1 TRAPPC4-223

Summary

About Us

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