Transcript: ENST00000600547.1 SMIM17-202

Description

small integral membrane protein 17 [Source:HGNC Symbol;Acc:HGNC:27114]

Location

Chromosome 19: 56,643,163-56,655,358 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 5644 variant alleles and maps to 95 oligo probes.

Gene

This transcript is a product of gene ENSG00000268182.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000598409.6	SMIM17-201	2543	118aa	ENSP00000471126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58683	P0DL12	NM_001193628.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000600547.1	SMIM17-202	573	103aa	ENSP00000472019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R1N7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 573 bps, Translation length: 103 residues

Transcript Support Level (TSL)

TSL:4

Version

ENST00000600547.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000600547.1 SMIM17-202

Summary

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Transcript: ENST00000600547.1 SMIM17-202

Summary

About Us

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