long intergenic non-protein coding RNA 1539 [Source:HGNC Symbol;Acc:HGNC:51307]
Chromosome 18: 56,083,361-56,137,463 reverse strand.
This transcript has 8 exons, is associated with 22089 variant alleles and maps to 317 oligo probes.
This transcript is a product of gene ENSG00000267712.7 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|
| ENST00000591974.5 | LINC01539-205 | 1884 | No protein | - | lncRNA | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENST00000587904.5 | LINC01539-201 | 2068 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENST00000666910.1 | LINC01539-227 | 1893 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000657412.1 | LINC01539-214 | 1838 | No protein | - | lncRNA | - | - | |
| ENST00000670613.1 | LINC01539-232 | 1749 | No protein | - | lncRNA | - | - | |
| ENST00000656570.1 | LINC01539-212 | 1704 | No protein | - | lncRNA | - | - | |
| ENST00000660365.1 | LINC01539-215 | 1681 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000589293.6 | LINC01539-202 | 1668 | No protein | - | lncRNA | - | TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, | |
| ENST00000665833.1 | LINC01539-226 | 1642 | No protein | - | lncRNA | - | - | |
| ENST00000664250.1 | LINC01539-222 | 1640 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000656913.1 | LINC01539-213 | 1594 | No protein | - | lncRNA | - | - | |
| ENST00000661430.1 | LINC01539-217 | 1573 | No protein | - | lncRNA | - | - | |
| ENST00000655121.1 | LINC01539-210 | 1558 | No protein | - | lncRNA | - | - | |
| ENST00000671420.1 | LINC01539-234 | 1479 | No protein | - | lncRNA | - | - | |
| ENST00000654820.1 | LINC01539-209 | 1476 | No protein | - | lncRNA | - | - | |
| ENST00000653652.1 | LINC01539-208 | 1474 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000671257.1 | LINC01539-233 | 1461 | No protein | - | lncRNA | - | - | |
| ENST00000664576.1 | LINC01539-223 | 1401 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000665019.1 | LINC01539-225 | 1383 | No protein | - | lncRNA | - | - | |
| ENST00000655648.1 | LINC01539-211 | 1369 | No protein | - | lncRNA | - | - | |
| ENST00000653524.1 | LINC01539-207 | 1358 | No protein | - | lncRNA | - | - | |
| ENST00000590484.2 | LINC01539-204 | 1348 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, | |
| ENST00000671483.1 | LINC01539-235 | 1337 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000664842.1 | LINC01539-224 | 1320 | No protein | - | lncRNA | - | - | |
| ENST00000663100.1 | LINC01539-221 | 1308 | No protein | - | lncRNA | - | - | |
| ENST00000662269.1 | LINC01539-218 | 1270 | No protein | - | lncRNA | - | - | |
| ENST00000668690.1 | LINC01539-229 | 1258 | No protein | - | lncRNA | - | - | |
| ENST00000671593.1 | LINC01539-236 | 1219 | No protein | - | lncRNA | - | - | |
| ENST00000662735.1 | LINC01539-220 | 1200 | No protein | - | lncRNA | - | - | |
| ENST00000662324.1 | LINC01539-219 | 1093 | No protein | - | lncRNA | - | - | |
| ENST00000669575.1 | LINC01539-230 | 1070 | No protein | - | lncRNA | - | - | |
| ENST00000670316.1 | LINC01539-231 | 862 | No protein | - | lncRNA | - | - | |
| ENST00000660685.1 | LINC01539-216 | 693 | No protein | - | lncRNA | - | - | |
| ENST00000593282.5 | LINC01539-206 | 678 | No protein | - | lncRNA | - | TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, | |
| ENST00000589447.1 | LINC01539-203 | 575 | No protein | - | lncRNA | - | TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, | |
| ENST00000668386.1 | LINC01539-228 | 542 | No protein | - | lncRNA | - | - |