Transcript: ENST00000466318.5 MSH5-SAPCD1-214

Description

MSH5-SAPCD1 readthrough (NMD candidate) [Source:HGNC Symbol;Acc:HGNC:41994]

Gene Synonyms

MSH5-C6ORF26

Location

Scaffold HSCHR6_MHC_APD_CTG1: 3,090,777-3,097,463 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 1 domain and feature and maps to 3188 oligo probes.

Gene

This transcript is a product of gene ENSG00000264619.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000466318.5	MSH5-SAPCD1-214	2871	496aa	ENSP00000463303.1	Nonsense mediated decay	A0A0G2JJ70	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000492776.5	MSH5-SAPCD1-216	2217	264aa	ENSP00000461962.1	Nonsense mediated decay	H0YF11	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000487383.1	MSH5-SAPCD1-215	950	29aa	ENSP00000463231.1	Nonsense mediated decay	H0YEB2	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 17, Coding exons: 13, Transcript length: 2,871 bps, Translation length: 496 residues

Transcript Support Level (TSL)

TSL:1

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000466318.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000466318.5 MSH5-SAPCD1-214

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Transcript: ENST00000466318.5 MSH5-SAPCD1-214

Summary

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