Transcript: ENST00000649294.1 TEN1-CDK3-203

Description

TEN1-CDK3 readthrough (NMD candidate) [Source:HGNC Symbol;Acc:HGNC:44420]

Location

Chromosome 17: 75,979,252-76,005,985 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 1 domain and feature, is associated with 12331 variant alleles and maps to 664 oligo probes.

Gene

This transcript is a product of gene ENSG00000261408.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000649294.1	TEN1-CDK3-203	2259	123aa	ENSP00000497034.1	Nonsense mediated decay	CCDS45780	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000567351.5	TEN1-CDK3-201	3897	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000569284.1	TEN1-CDK3-202	3287	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 11, Coding exons: 3, Transcript length: 2,259 bps, Translation length: 123 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS45780

Version

ENST00000649294.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000649294.1 TEN1-CDK3-203

Summary

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Transcript: ENST00000649294.1 TEN1-CDK3-203

Summary

About Us

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