Transcript: ENST00000509549.5 C22orf39-203

Description

chromosome 22 open reading frame 39 [Source:HGNC Symbol;Acc:HGNC:27012]

Gene Synonyms

MGC74441

Location

Chromosome 22: 19,351,368-19,447,691 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 1 domain and feature, is associated with 40797 variant alleles and maps to 541 oligo probes.

Gene

This transcript is a product of gene ENSG00000242259.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000399562.9	C22orf39-201	3720	105aa	ENSP00000382474.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33599	Q6P5X5	NM_173793.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000399568.5	C22orf39-202	1005	80aa	ENSP00000382478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54498	A0A075B6P1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000509549.5	C22orf39-203	2979	92aa	ENSP00000424903.1	Nonsense mediated decay		E0CX16	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 24, Coding exons: 4, Transcript length: 2,979 bps, Translation length: 92 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000509549.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000509549.5 C22orf39-203

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Transcript: ENST00000509549.5 C22orf39-203

Summary

About Us

Get help

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