Transcript: ENST00000701585.1 FTX-279

Description

FTX transcript, XIST regulator [Source:HGNC Symbol;Acc:HGNC:37190]

Gene Synonyms

FLJ33139, LINC00182, MIR374AHG, NCRNA00182

Location

Chromosome X: 74,069,027-74,292,351 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 67196 variant alleles and maps to 220 oligo probes.

Gene

This transcript is a product of gene ENSG00000230590.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000430772.6	FTX-204	919	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000638437.1	FTX-214	12267	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000639539.1	FTX-217	11469	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000638232.1	FTX-213	11246	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000638681.1	FTX-215	9771	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000603037.2	FTX-210	8347	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000651703.1	FTX-222	4158	No protein	-	lncRNA	-	-
ENST00000651392.1	FTX-220	4008	No protein	-	lncRNA	-	-
ENST00000641360.1	FTX-218	3897	No protein	-	lncRNA	-	-
ENST00000656041.1	FTX-239	3400	No protein	-	lncRNA	-	-
ENST00000657327.1	FTX-242	3307	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000654870.3	FTX-238	3118	No protein	-	lncRNA	-	-
ENST00000687056.1	FTX-274	3054	No protein	-	lncRNA	-	-
ENST00000652527.1	FTX-230	2849	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000662864.1	FTX-260	2838	No protein	-	lncRNA	-	-
ENST00000429124.7	FTX-203	2786	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000662240.1	FTX-258	2728	No protein	-	lncRNA	-	-
ENST00000660224.1	FTX-252	2697	No protein	-	lncRNA	-	-
ENST00000664343.1	FTX-262	2690	No protein	-	lncRNA	-	-
ENST00000668224.1	FTX-267	2519	No protein	-	lncRNA	-	-
ENST00000669263.1	FTX-268	2488	No protein	-	lncRNA	-	-
ENST00000652013.2	FTX-224	2426	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602812.6	FTX-209	2359	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000652609.1	FTX-232	2334	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000651451.1	FTX-221	2322	No protein	-	lncRNA	-	-
ENST00000652540.1	FTX-231	2304	No protein	-	lncRNA	-	-
ENST00000666535.1	FTX-266	2179	No protein	-	lncRNA	-	-
ENST00000657611.1	FTX-243	2143	No protein	-	lncRNA	-	-
ENST00000652319.1	FTX-226	2137	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423992.3	FTX-202	1997	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000652331.2	FTX-228	1996	No protein	-	lncRNA	-	-
ENST00000658439.1	FTX-245	1980	No protein	-	lncRNA	-	-
ENST00000652496.1	FTX-229	1973	No protein	-	lncRNA	-	-
ENST00000652071.1	FTX-225	1964	No protein	-	lncRNA	-	-
ENST00000665069.1	FTX-264	1958	No protein	-	lncRNA	-	-
ENST00000664123.1	FTX-261	1925	No protein	-	lncRNA	-	-
ENST00000661335.1	FTX-257	1909	No protein	-	lncRNA	-	-
ENST00000665313.2	FTX-265	1875	No protein	-	lncRNA	-	-
ENST00000661133.1	FTX-256	1850	No protein	-	lncRNA	-	-
ENST00000653874.2	FTX-236	1831	No protein	-	lncRNA	-	-
ENST00000652970.1	FTX-233	1796	No protein	-	lncRNA	-	-
ENST00000653390.2	FTX-235	1775	No protein	-	lncRNA	-	-
ENST00000651936.1	FTX-223	1768	No protein	-	lncRNA	-	-
ENST00000657070.1	FTX-241	1757	No protein	-	lncRNA	-	-
ENST00000701585.1	FTX-279	1667	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000660481.1	FTX-253	1663	No protein	-	lncRNA	-	-
ENST00000654373.1	FTX-237	1662	No protein	-	lncRNA	-	-
ENST00000671343.1	FTX-271	1658	No protein	-	lncRNA	-	-
ENST00000659012.1	FTX-247	1630	No protein	-	lncRNA	-	-
ENST00000656977.1	FTX-240	1627	No protein	-	lncRNA	-	-
ENST00000651140.1	FTX-219	1618	No protein	-	lncRNA	-	-
ENST00000659390.1	FTX-248	1556	No protein	-	lncRNA	-	-
ENST00000664803.1	FTX-263	1529	No protein	-	lncRNA	-	-
ENST00000653018.1	FTX-234	1486	No protein	-	lncRNA	-	-
ENST00000671067.1	FTX-270	1477	No protein	-	lncRNA	-	-
ENST00000455395.6	FTX-205	1435	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000659574.1	FTX-250	1414	No protein	-	lncRNA	-	-
ENST00000659407.1	FTX-249	1411	No protein	-	lncRNA	-	-
ENST00000638985.1	FTX-216	1367	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000660829.1	FTX-254	1358	No protein	-	lncRNA	-	-
ENST00000661084.1	FTX-255	1328	No protein	-	lncRNA	-	-
ENST00000660100.1	FTX-251	1262	No protein	-	lncRNA	-	-
ENST00000691187.2	FTX-275	1257	No protein	-	lncRNA	-	-
ENST00000602420.6	FTX-206	1246	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000662494.1	FTX-259	1232	No protein	-	lncRNA	-	-
ENST00000670936.1	FTX-269	1137	No protein	-	lncRNA	-	-
ENST00000658448.1	FTX-246	1136	No protein	-	lncRNA	-	-
ENST00000671385.1	FTX-272	1111	No protein	-	lncRNA	-	-
ENST00000658203.1	FTX-244	1097	No protein	-	lncRNA	-	-
ENST00000603672.5	FTX-211	1077	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000701078.1	FTX-277	917	No protein	-	lncRNA	-	-
ENST00000701244.1	FTX-278	916	No protein	-	lncRNA	-	-
ENST00000603952.1	FTX-212	905	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000602776.6	FTX-208	827	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000693483.1	FTX-276	765	No protein	-	lncRNA	-	-
ENST00000418855.6	FTX-201	745	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000652327.1	FTX-227	583	No protein	-	lncRNA	-	-
ENST00000602576.5	FTX-207	574	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000685808.1	FTX-273	530	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 1,667 bps,

Version

ENST00000701585.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000701585.1 FTX-279

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Transcript: ENST00000701585.1 FTX-279

Summary

About Us

Get help

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