Transcript: ENST00000415469.5 LINC00858-201

Description

long intergenic non-protein coding RNA 858 [Source:HGNC Symbol;Acc:HGNC:27276]

Gene Synonyms

CRCAL-2

Location

Chromosome 10: 84,279,980-84,294,659 forward strand.

About this transcript

This transcript has 6 exons, is associated with 6833 variant alleles and maps to 222 oligo probes.

Gene

This transcript is a product of gene ENSG00000229404.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000661556.1	LINC00858-205	1400	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000415469.5	LINC00858-201	2685	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000666427.1	LINC00858-208	2234	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000663433.1	LINC00858-207	1833	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000653603.1	LINC00858-203	1724	No protein	-	lncRNA	-	-
ENST00000661758.1	LINC00858-206	1720	No protein	-	lncRNA	-	-
ENST00000669640.1	LINC00858-209	1516	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000661042.1	LINC00858-204	1094	No protein	-	lncRNA	-	-
ENST00000437892.1	LINC00858-202	674	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 2,685 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000415469.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

dotter confirmed [Definitions]

QC splicing correct

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000415469.5 LINC00858-201

Summary

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Transcript: ENST00000415469.5 LINC00858-201

Summary

About Us

Get help

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