Transcript: ENST00000640821.3 ARL9-202

Description

ADP ribosylation factor like GTPase 9 [Source:HGNC Symbol;Acc:HGNC:23592]

Location

Chromosome 4: 56,505,791-56,524,453 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 17 domains and features, is associated with 7577 variant alleles and maps to 193 oligo probes.

Gene

This transcript is a product of gene ENSG00000196503.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000640821.3	ARL9-202	1447	265aa	ENSP00000492671.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS87224	A0A1W2PS79	NM_001363794.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000360096.3	ARL9-201	1392	123aa	ENSP00000353210.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59474	Q6T311-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000645327.1	ARL9-203	1640	87aa	ENSP00000496178.1	Nonsense mediated decay		A0A2R8YGM7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,447 bps, Translation length: 265 residues

MANE

This MANE Select transcript contains ENSP00000492671 and matches to NM_001363794.2 and NP_001350723.1

CCDS

This transcript is a member of the Human CCDS set: CCDS87224

Transcript Support Level (TSL)

TSL:5

Version

ENST00000640821.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000640821.3 ARL9-202

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Transcript: ENST00000640821.3 ARL9-202

Summary

About Us

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