Transcript: ENST00000511881.1 SPZ1-202

Description

spermatogenic leucine zipper 1 [Source:HGNC Symbol;Acc:HGNC:30721]

Gene Synonyms

FLJ25709, NYD-TSP1, PPP1R148

Location

Chromosome 5: 80,319,625-80,320,918 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 5 domains and features, is associated with 701 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSG00000164299.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000296739.6	SPZ1-201	1841	430aa	ENSP00000369611.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43336	A0A140VKA5 Q9BXG8	NM_032567.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000511881.1	SPZ1-202	859	234aa	ENSP00000426530.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RFL8	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 859 bps, Translation length: 234 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000511881.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000511881.1 SPZ1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000511881.1 SPZ1-202

Summary

About Us

Get help

Our sister sites

Follow us