Transcript: ENST00000449209.1 LYPD1-203

Description

LY6/PLAUR domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28431]

Gene Synonyms

LYPDC1, MGC29643

Location

Chromosome 2: 132,663,026-132,670,200 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 3326 variant alleles and maps to 180 oligo probes.

Gene

This transcript is a product of gene ENSG00000150551.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000397463.3	LYPD1-202	3458	141aa	ENSP00000380605.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42759	Q8N2G4-1	NM_144586.7	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000345008.6	LYPD1-201	1033	89aa	ENSP00000340563.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46416	Q8N2G4-4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000449209.1	LYPD1-203	578	39aa	ENSP00000396651.1	Nonsense mediated decay		F8WD77	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 578 bps, Translation length: 39 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000449209.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000449209.1 LYPD1-203

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Transcript: ENST00000449209.1 LYPD1-203

Summary

About Us

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