Transcript: ENST00000534397.5 SCGB1A1-202

Description

secretoglobin family 1A member 1 [Source:HGNC Symbol;Acc:HGNC:12523]

Gene Synonyms

CC10, CC16, CCSP, UGB

Location

Chromosome 11: 62,405,103-62,423,195 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 8199 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSG00000149021.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000278282.3	SCGB1A1-201	443	91aa	ENSP00000278282.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8020	A0A0S2Z4R6 P11684	NM_003357.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000534397.5	SCGB1A1-202	466	56aa	ENSP00000432866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PN95	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 466 bps, Translation length: 56 residues

Transcript Support Level (TSL)

TSL:3

Version

ENST00000534397.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000534397.5 SCGB1A1-202

Summary

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Transcript: ENST00000534397.5 SCGB1A1-202

Summary

About Us

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