Transcript: ENST00000645739.1 ETAA1-204

Description

ETAA1 activator of ATR kinase [Source:HGNC Symbol;Acc:HGNC:24648]

Gene Synonyms

ETAA16

Location

Chromosome 2: 67,397,322-67,412,089 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 6809 variant alleles and maps to 329 oligo probes.

Gene

This transcript is a product of gene ENSG00000143971.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000272342.6	ETAA1-201	4948	926aa	ENSP00000272342.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1882	Q9NY74	NM_019002.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000644028.1	ETAA1-203	2946	202aa	ENSP00000495888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8Y7B6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000462772.2	ETAA1-202	5687	82aa	ENSP00000495585.1	Nonsense mediated decay		A0A2R8Y6Y8	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000645739.1	ETAA1-204	3110	118aa	ENSP00000494634.1	Nonsense mediated decay		A0A2R8YEV8	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 3,110 bps, Translation length: 118 residues

Version

ENST00000645739.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000645739.1 ETAA1-204

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Transcript: ENST00000645739.1 ETAA1-204

Summary

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